PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125857.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 380aa    MW: 39395.2 Da    PI: 8.0319
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125857.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702204.53e-631773333154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                     +gta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + ++a s+    ++++ +k++r    ++q+a+s+t++s++ ++
  XP_009125857.1 177 AGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTTAGSSP---STSSGTKKPRIA-GAQQQATSHTSTSNT-PP 266
                     6899**********************************************99888875555...457788888876.666677777776666.56 PP

          DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     ++++tss          +P +v+++avf+cv+v++++dg +e+aYq++v+igGh+fkG+LydqGle 
  XP_009125857.1 267 QSFDTSSsqkdggsreaWPGQVRAAAVFKCVKVTAMEDGGDEYAYQAVVKIGGHIFKGFLYDQGLEP 333
                     677777778999999*************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.0E-57179332IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.3E-26181223IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.3E-29283331IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSDSGAFTDW TAAATTTTSS RATEDLSLGF NAGPAVVHGG LASASAAAAG VPSWPPGSSV  60
RYGLPSAAAT EMGMVGLRDV YLVAPAYHHH QNVGLVSGSD QINSNAAAAS LGVGVIPLLT  120
AAPAQQQHQN VEDTDINFVG NSRRWQHNDS SNNQTEYLHF KSTTVASTSN NSGSGSAGTA  180
TCQDCGNQAK KECKQRRCRT CCKSRGFDCS THVKSTWVSA ARRRERQVMP TTAGSSPSTS  240
SGTKKPRIAG AQQQATSHTS TSNTPPQSFD TSSSQKDGGS REAWPGQVRA AAVFKCVKVT  300
AMEDGGDEYA YQAVVKIGGH IFKGFLYDQG LEPKEGFPNM SDLHLGGGAS NHNVVSASQP  360
ILDPPNVYGG GGGAGAGFYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052660.0GU205266.1 Brassica rapa subsp. pekinensis lateral root primordium 1 (LRP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125857.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK91e-147LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLM4E3L90.0M4E3L9_BRARP; Uncharacterized protein
STRINGBra023372.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.41e-154Lateral root primordium (LRP) protein-related